PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.302580.1
Common NameCsa_5G157220, LOC101216674
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 261aa    MW: 29813.7 Da    PI: 5.681
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.302580.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-1181133155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++ +h  +Er+RR+++ s +++Lr+llP       ++K s  +   ++v+YI+++q
  Cucsa.302580.1  81 KKIMHRDVERQRRQEMSSLYSTLRSLLPIeY---LKGKRSICDHMHETVKYIRYMQ 133
                     5789*************************77...9*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-1379149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.32E-1079137No hitNo description
PROSITE profilePS5088813.14180132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-882133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-982151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-486138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDLNNVESPF LFDDLGDELL PLPSLSCIDN CFVPQFPSIL ENNNNSTVSP TLKNSRRKKP  60
VPANTSDDKD DENNSNEHKK KKIMHRDVER QRRQEMSSLY STLRSLLPIE YLKGKRSICD  120
HMHETVKYIR YMQSKIQELC DKRDELKKLQ SNNQNPGMVE TETLQSTKRD KVVVRARDGS  180
GGIQVILDTP TQHRLTLSNI LEALIDQGFE ILSCSSNKLN DRFLHTIESQ PAVFTDTNSP  240
LIDISDLQYM LANLEYCPLD *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147594.10.0PREDICTED: transcription factor bHLH36-like
TrEMBLA0A0A0KKN90.0A0A0A0KKN9_CUCSA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.14e-31bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]